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• Collapsing (Old)
• Command Options
  • Annotation Level Filter Options
  • Genotype Level Filter Options
  • Variant Level Filter Options
• Fisher's Exact Test
• Generate Ped Map
• List Trio Compound Het
• List Trio Denovo
• List Variant Genotype
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  • External Datasets
    • 1000 Genomes
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    • General dbGaP Information
      • DbGaP downloads
        • EVS individual data
      • DbGaP uploads
    • Gerp
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    • KnownVar
    • MGI
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    • SubRVIS
    • Swedish schizophrenia controls
    • TraP
    • Wellderly
  • Family Analysis
  • Functions
    • Collapsing
    • Collapsing Compound Het
    • Coverage Analysis Functions
      • Site Coverage Comparison
    • Coverage Comparison
    • External Datasets Functions
      • List 1000 Genomes
      • List Denovo DB
      • List Gerp
      • List gnomAD Exome
      • List gnomAD Genome
      • List Kaviar
      • List MGI
      • List Rvis
      • List subRVIS
      • List Trap
    • Genotype Analysis Functions
      • List Parental Mosaic
      • List Sibling Comp Het
      • List Trio
      • List Variant
      • Logistic Regression
    • Linear Regression
    • List EVS
    • List ExAC
    • List Flanking Sequence
    • List Gene Dx
    • List Known Var
    • List Variant Annotation
    • Non Database functions
      • PPI
    • Site Coverage Summary
    • Variant Annotation Functions
  • Internal Toolkit
    • Cohort Selection
    • Kinship Pruning
    • SNV Data Sets
  • Output Columns
    • Annotation Level Columns
    • Genotype Level Columns
    • Variant Level Columns
  • Publications
  • Quick Start
  • SAGA
    • SAGA Sample Ingest
  • Tester's Guide

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