Tester's Guide¶
Weekly Test:¶
ATAV is under the process of code refactoring, so the goal for weekly test is to make sure nothing broke in this process.
Test through all the main functions:- --ped-map
- --fisher
- --collapsing
- --list-var-geno
- --list-trio-denovo
- --list-trio-comp-het
- --family-analysis
- --coverage-summary
Example for '--list-var-geno' function:
atav_beta.sh --list-var-geno --pedinfo /nfs/goldstein/goldsteinlab/software/atav_home/test/ped --function /nfs/goldstein/goldsteinlab/software/atav_home/test/function --region /nfs/goldstein/goldsteinlab/software/atav_home/test/region --out $YourPath
atav.sh --list-var-geno --pedinfo /nfs/goldstein/goldsteinlab/software/atav_home/test/ped --function /nfs/goldstein/goldsteinlab/software/atav_home/test/function --region /nfs/goldstein/goldsteinlab/software/atav_home/test/region --out $YourPath
When the above two runs complete, check the output folder then compare the result between beta version(atav_beta.sh) and released version(atav.sh).
Please email to nick.ren@duke.edu, if you found anything wrong or different.