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Tester's Guide

Weekly Test:

ATAV is under the process of code refactoring, so the goal for weekly test is to make sure nothing broke in this process.

Test through all the main functions:

Example for '--list-var-geno' function:

atav_beta.sh 
--list-var-geno
--pedinfo /nfs/goldstein/goldsteinlab/software/atav_home/test/ped  
--function /nfs/goldstein/goldsteinlab/software/atav_home/test/function  
--region /nfs/goldstein/goldsteinlab/software/atav_home/test/region  
--out $YourPath

atav.sh 
--list-var-geno
--pedinfo /nfs/goldstein/goldsteinlab/software/atav_home/test/ped  
--function /nfs/goldstein/goldsteinlab/software/atav_home/test/function  
--region /nfs/goldstein/goldsteinlab/software/atav_home/test/region  
--out $YourPath

When the above two runs complete, check the output folder then compare the result between beta version(atav_beta.sh) and released version(atav.sh).

Please email to , if you found anything wrong or different.

Monthly Test: