Project

General

Profile

Site Coverage Summary

Command examples:

atav.sh --site-coverage-summary --sample PATH_TO_SAMPLE_FILE --gene-boundary PATH_TO_GENE_BOUNDARY_FILE --min-coverage 10 --out PATH_TO_OUTPUT_DIR

Command options:

--site-coverage-summary: trigger site coverage summary analysis.

Output:

site.summary.csv

  • Gene
  • Chr
  • Pos
  • Site Coverage

sample.summary.csv and coverage.details.csv are the same as the one in Coverage Summary.