SGE Cluster Guide¶
Job Submition Host:¶
HOST: qs1.igm.cumc.columbia.edu
IP: 10.73.50.79
Monitoring Jobs in the Queue:¶
Now that ATAV job has been submitted, we can take a look at the job’s status in the queue using the command qstat:
[zr2180@qs1]$ qstat job-ID prior name user state submit/start at queue slots ja-task-ID ----------------------------------------------------------------------------------------------------------------- 8186313 0.00000 atav zr2180 qw 08/30/2017 11:57:42 5
From this output, we can see that the job is in the qw state which stands for queued and waiting. After a few seconds, the job will transition into a r, or running, state at which point the job will begin executing.
[zr2180@qs1 ~]$ qstat job-ID prior name user state submit/start at queue slots ja-task-ID ----------------------------------------------------------------------------------------------------------------- 8186315 0.56214 atav zr2180 r 08/30/2017 11:59:03 all.q@igm-cluster067.igm.cumc. 5
Once the job has finished, the job will be removed from the queue and will no longer appear in the output of qstat:
[zr2180@qs1 ~]$ qstat [zr2180@qs1 ~]$
If you need to check details of one specific job, you can run -j with job number:
[zr2180@qs1 ~]$ qstat -j 8186313
Deleting a Job from the Queue:¶
You can delete a job from the queue using the qdel command with job number:
[zr2180@qs1 ~]$ qdel 8186525 zr2180 has deleted job 8186525