Project

General

Profile

List subRVIS

Command examples:

atav.sh --list-sub-rvis --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-sub-rvis: trigger list sub rvis function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

Output:

subrvis.csv

  • Variant ID
  • Gene Name
  • subRVIS Domain Name
  • subRVIS Domain Score
  • subRVIS Domain OEratio Percentile
  • subRVIS Exon Name
  • subRVIS Exon Score
  • subRVIS Exon OEratio Percentile

Note: the scores are ExAC 0.3 based.

For additional details, please check subRVIS