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List Variant Annotation

Special Note
  • This function will only output variant annotation data without variant genotype level data.

Command examples:

atav.sh --list-var-anno --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-var-anno: trigger list variant annotation function.

All the Variant Level Filter Options and Annotation Level Filter Options are available to use in this function.

Output:

annotation.csv

Please check Output Columns for common columns.