List TraP¶

Command examples:¶

atav.sh --list-trap --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:¶

--list-trap: trigger list trap function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

Output:¶

gerp.csv

• Variant ID
• Gene
• TraP Score

For additional details, please check TraP.