List TraP¶
Command examples:¶
atav.sh --list-trap --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR
Command options:¶
--list-trap: trigger list trap function.
--variant: use a variant id file (one id per line) or a variant id list (comma delimited)
id format: chr-pos-ref-alt
Output:¶
gerp.csv
- Variant ID
- Gene
- TraP Score
For additional details, please check TraP.