Project

General

Profile

List TOPMed

Command examples:

atav.sh --list-top-med --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-top-med: trigger list TopMed function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

Output:

topmed.csv

  • Variant ID
  • TopMed AF

For additional details, please check TOPMed