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List REVEL

Command examples:

atav.sh --list-revel --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

atav.sh --list-revel --region PATH_TO_YOUR_REGION_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-revel: trigger list revel function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

--region: use a region file or a region list (comma delimited)

region format: chr:start-end

Output:

revel.csv

  • Variant ID
  • Reference Amino Acid
  • Alternate Amino Acid
  • REVEL

For additional details, please check REVEL