List REVEL¶
Command examples:¶
atav.sh --list-revel --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR atav.sh --list-revel --region PATH_TO_YOUR_REGION_FILE --out PATH_TO_OUTPUT_DIR
Command options:¶
--list-revel: trigger list revel function.
--variant: use a variant id file (one id per line) or a variant id list (comma delimited)
id format: chr-pos-ref-alt
--region: use a region file or a region list (comma delimited)
region format: chr:start-end
Output:¶
revel.csv
- Variant ID
- Reference Amino Acid
- Alternate Amino Acid
- REVEL
For additional details, please check REVEL