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List Parent Comp Het

Definition:

  • identify compound het variants in each parent.
  • restrict to variants where 2 qualifying variants are found in the same gene.
  • click to download parent comp het rules.

Command examples:

atav.sh --list-parent-comp-het --sample PATH_TO_SAMPLE_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-parent-comp-het: trigger list parent compound heterozygosity function.

All the Command Options are available to use in this function.

Output:

parent_comphet.csv

  • Family ID
  • Parent
  • Comp Het Flag
  • Variant1
  • Variant2

Please check Output Columns for common columns.