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List Gene Dx

Command examples:

atav.sh --list-gene-dx --out PATH_TO_OUTPUT

Command options:

--list-gene-dx: trigger list gene dx function.

All the Variant Level Filter Options and Annotation Level Filter Options are available to use in this function.

Output:

genedx.csv

  • Variant ID: chr-pos-ref-alt
  • Gene Name
  • NM #
  • NP #
  • Coding Sequence Change
  • Amino Acid Change