List GME¶

Command examples:¶

atav.sh --list-gme --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:¶

--list-gme: trigger list GME function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

Output:¶

gme.csv

• Variant ID
• GME AF

For additional details, please check GME