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List GME

Command examples:

atav.sh --list-gme --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-gme: trigger list GME function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

Output:

gme.csv

  • Variant ID
  • GME AF

For additional details, please check GME