List GME¶
Command examples:¶
atav.sh --list-gme --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR
Command options:¶
--list-gme: trigger list GME function.
--variant: use a variant id file (one id per line) or a variant id list (comma delimited)
id format: chr-pos-ref-alt
Output:¶
gme.csv
- Variant ID
- GME AF
For additional details, please check GME