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List CCR

Command examples:

atav.sh --list-ccr --variant PATH_TO_YOUR_VARIANT_FILE --out PATH_TO_OUTPUT_DIR

atav.sh --list-ccr --region PATH_TO_YOUR_REGION_FILE --out PATH_TO_OUTPUT_DIR

Command options:

--list-ccr: trigger list CCR function.

--variant: use a variant id file (one id per line) or a variant id list (comma delimited)

id format: chr-pos-ref-alt

--region: use a region file or a region list (comma delimited)

region format: chr:start-end

Output:

ccr.csv

  • Variant ID
  • Gene Name
  • CCR Region Name
  • CCR Percentile

For additional details, please check CCR