Project

General

Profile

Cohort Level Columns

  • Hom Case: number of cases hom
  • Het Case: number of cases het
  • Hom Ref Case: number of cases hom ref
  • Hom Case Freq: allele frequency of cases hom
  • Het Case Freq: allele frequency of cases het
  • Hom Ctrl: number of ctrls hom
  • Het Ctrl: number of ctrls het
  • Hom Ref Ctrl: number of ctrls hom ref
  • Hom Ctrl Freq: allele frequency of ctrls hom
  • Het Ctrl Freq: allele frequency of ctrls het
  • QC Fail Case: the number of case samples where the variant was called in the vcf but failed the required QC.
  • QC Fail Ctrl: the number of control samples where the variant was called in the vcf but failed the required QC.
  • Covered Case: the number of covered case samples.
  • Covered Ctrl: the number of covered control samples.
  • Covered Case Percentage: the percentage of covered case samples.
  • Covered Ctrl Percentage: the percentage of covered control samples.
  • Case AF: case allele frequency
  • Ctrl AF: ctrl allele frequency
  • Case HWE_P
  • Ctrl HWE_P