Cohort Level Columns¶

• Hom Case: number of cases hom
• Het Case: number of cases het
• Hom Ref Case: number of cases hom ref
• Hom Case Freq: allele frequency of cases hom
• Het Case Freq: allele frequency of cases het
• Hom Ctrl: number of ctrls hom
• Het Ctrl: number of ctrls het
• Hom Ref Ctrl: number of ctrls hom ref
• Hom Ctrl Freq: allele frequency of ctrls hom
• Het Ctrl Freq: allele frequency of ctrls het
• QC Fail Case: the number of case samples where the variant was called in the vcf but failed the required QC.
• QC Fail Ctrl: the number of control samples where the variant was called in the vcf but failed the required QC.
• Covered Case: the number of covered case samples.
• Covered Ctrl: the number of covered control samples.
• Covered Case Percentage: the percentage of covered case samples.
• Covered Ctrl Percentage: the percentage of covered control samples.
• Case AF: case allele frequency
• Ctrl AF: ctrl allele frequency
• Case HWE_P
• Ctrl HWE_P