Wiki » Output Columns »
Cohort Level Columns¶
- Hom Case: number of cases hom
- Het Case: number of cases het
- Hom Ref Case: number of cases hom ref
- Hom Case Freq: allele frequency of cases hom
- Het Case Freq: allele frequency of cases het
- Hom Ctrl: number of ctrls hom
- Het Ctrl: number of ctrls het
- Hom Ref Ctrl: number of ctrls hom ref
- Hom Ctrl Freq: allele frequency of ctrls hom
- Het Ctrl Freq: allele frequency of ctrls het
- QC Fail Case: the number of case samples where the variant was called in the vcf but failed the required QC.
- QC Fail Ctrl: the number of control samples where the variant was called in the vcf but failed the required QC.
- Covered Case: the number of covered case samples.
- Covered Ctrl: the number of covered control samples.
- Covered Case Percentage: the percentage of covered case samples.
- Covered Ctrl Percentage: the percentage of covered control samples.
- Case AF: case allele frequency
- Ctrl AF: ctrl allele frequency
- Case HWE_P
- Ctrl HWE_P
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