- Collapsing function ran out of memory when system call to run permutation based empirical Q-Q plots. (issue #2732)
- --mtr-centile input cutoff value changed from "0-1" to "0-100". (issue #2708)
Note: if your atav log only includes "ATAV command" after the collapsing runs, that means it ran out of memory when calling perm qq plot script. The gene summary file and gene matrix file should be completed already.